| Ellisembia bambusicola (M.B. Ellis) J. Mena & G. Delgado, 2000 |
| Ellisembia brachypus (Ellis & Everh.) Subram., 1992 |
| Ellisembia calyptrata (Cabello, Cazau & Aramb.) W.P. Wu, 2005 |
| Ellisembia leonensis (M.B. Ellis) McKenzie, 1995 |
| Ellisembia leptospora (Sacc. & Roum.) W. P. Wu, 2005 |
| Ellisembia vaga (Nees & T. Nees) Subram., 1992 |
| Elotespora R. F. Castañeda & Heredia, 2010 |
| Elotespora mexicana R. F. Castañeda & Heredia, 2010 |
| Endocalyx Berk. & Broome, 1876 |
| Endocalyx melanoxanthus (Berk. & Broome) Petch, 1908 |
| Endocalyx melanoxanthus var. melanoxanthus (Berk. & Broome) Petch, 1908 |
| Endococcus Nyl., 1855 |
| Endococcus incrassatus Etayo & Breuss, 2001 |
| Endococcus oreinae Hafellner, 2002 |
| Endophragmia Duvernoy & Maire, 1920 |
| Endophragmia dimorphospora Awao & Udagawa, 1974 |
| Endophragmia hyalosperma (Corda) Morgan-Jones & A.L.J. Cole, 1964 |
| Endophragmia parva M. B. Ellis, 1976 |
| Ernakulamia Subram., 1996 |
| Ernakulamia cochinensis (Subram.) Subram., 1996 |