| Cyprinodon longidorsalis Lozano-Vilano & Contreras-Balderas, 1993 |
| Cyprinodon macrolepis R. R. Miller, 1976 |
| Cyprinodon macularius Baird & Girard, 1853 |
| Cyprinodon macularius subsp. eremus Miller & Fuiman, 1987 |
| Cyprinodon macularius subsp. macularius Baird & Girard, 1853 |
| Cyprinodon maya J. M. Humphries & R. R. Miller, 1981 |
| Cyprinodon meeki R. R. Miller, 1976 |
| Cyprinodon nazas R. R. Miller, 1976 |
| Cyprinodon pachycephalus Minckley & Minckley, 1986 |
| Cyprinodon parvus Baird & Girard, 1855 |
| Cyprinodon pisteri R. R. Miller & W. L. Minckley, 2002 |
| Cyprinodon salvadori Lozano-Vilano, 2002 |
| Cyprinodon simus J. M. Humphries & R. R. Miller, 1981 |
| Cyprinodon suavium Strecker, 2005 |
| Cyprinodon tularosa Miller & Echelle, 1975 |
| Cyprinodon variegatus Lacépède, 1803 |
| Cyprinodon variegatus subsp. artifrons Hubbs, 1936 |
| Cyprinodon variegatus subsp. variegatus Lacépède, 1803 |
| Cyprinodon verecundus Humphries, 1984 |
| Cyprinodon veronicae Lozano-Vilano & Contreras-Balderas, 1993 |