| Aphanocapsa nubilum Komárek & H. Kling, 1991 |
| Aphanocapsa planctonica (G.M. Sm.) Komárek & Anagn., 1995 |
| Aphanocapsa pulchra Kütz. Rabenh., 1865 |
| Aphanocapsa rivularis (Carmich.) Rabenh., 1865 |
| Aphanocapsa zanardinii (Hauck) Hansg., 1889 |
| Aphanothece Nägeli, 1849 |
| Aphanothece caldariorum Richt., 1880 |
| Aphanothece castagnei (Bréb.) Rabenh., 1865 |
| Aphanothece clathrata W. West & G.S. West, 1906 |
| Aphanothece elabens (Bréb.) Elenkin, 1938 |
| Aphanothece gracilis Schiller, 1954 |
| Aphanothece membranacea Rabenh., 1865 |
| Aphanothece microscopica Nägeli, 1849 |
| Aphanothece minutissima (W. West) Komárk. -Legn. & Cronberg, 1994 |
| Aphanothece nidulans Richt., 1884 |
| Aphanothece saxicola Nägeli, 1849 |
| Aphanothece stagnina (Spreng.) A. Braun, 1863 |
| Asterocapsa Chu, 1952 |
| Asterocapsa divina Komárek, 1993 |
| Coelomoron Buell, 1938 |