| Eunotia luna Ehrenb., 1845 |
| Eunotia lunaris (Ehrenb.) Grunow, 1877 |
| Eunotia maior Rabenh., 1864 |
| Eunotia major W. Sm., 1930 |
| Eunotia major var. gigantea Frenguelli, 1933 |
| Eunotia major var. major W. Sm., 1930 |
| Eunotia meisteri Hust., 1930 |
| Eunotia meridiana Metzeltin & Lange-Bert., 1998 |
| Eunotia metamonodon H.Lange-Bert., 2011 |
| Eunotia minor (Kütz.) Grunow, 1881 |
| Eunotia minuta Hilse, 1861 |
| Eunotia monodon Ehrenb., 1843 |
| Eunotia monodon var. alpina (Kütz.) Grunow, 1878 |
| Eunotia mucophila (Lange-Bert. Nörpel-Schempp & Alles) Lange-Bert., 2007 |
| Eunotia naegelii Migula, 1907 |
| Eunotia parallela Ehrenb., 1843 |
| Eunotia paratridentula Lange-Bert. & Kulikovskiy, 2010 |
| Eunotia pectinalis (Kütz.) Rabenh., 1864 |
| Eunotia pectinalis var. rostrata Germain, 1981 |
| Eunotia pectinalis var. undulata (Ralfs) Rabenhorst, 1864 |