| Caloneis Cleve, 1894 |
| Caloneis aerophila W.Bock, 1963 |
| Caloneis affinis Z. Levkov & D.M. Williams, 2014 |
| Caloneis alpestris (Grunow) Cleve, 1894 |
| Caloneis alpestris var. alpestris (Grunow) Cleve, 1894 |
| Caloneis amphisbaena (Bory) Cleve, 1894 |
| Caloneis amphisbaena var. subsalina (Donkin) Cleve, 1894 |
| Caloneis aquaecaeruleae Metzeltin & Lange-Bert., 2007 |
| Caloneis bacillum (Grunow) Cleve, 1894 |
| Caloneis bacillum var. bacillum (Grunow) Cleve, 1894 |
| Caloneis bacillum var. fontinalis (Grunow) Cleve, 1894 |
| Caloneis branderii (Hust.) Krammer, 1985 |
| Caloneis budensis (Grunow) Krammer, 1985 |
| Caloneis consimilis (A. Schmidt) Cleve, 1894 |
| Caloneis ectorii Metzeltin & Lange-Bert., 2007 |
| Caloneis fontinalis (Grunow) Cleve-Euler, 1932 |
| Caloneis formosa (W. Greg.) Cleve, 1894 |
| Caloneis hardmaniana Cleve, 1894 |
| Caloneis hyalina Hust., 1937 |
| Caloneis lancettula (Schulz) Lange-Bert. & Witkowski, 1996 |