| Caloneis Cleve, 1894 |
| Caloneis alpestris (Grunow) Cleve, 1894 |
| Caloneis alpestris var. alpestris (Grunow) Cleve, 1894 |
| Caloneis amphisbaena (Bory) Cleve, 1894 |
| Caloneis bacillum (Grunow) Cleve, 1894 |
| Caloneis bacillum var. bacillum (Grunow) Cleve, 1894 |
| Caloneis consimilis (A. Schmidt) Cleve, 1894 |
| Caloneis formosa (W. Greg.) Cleve, 1894 |
| Caloneis hardmaniana Cleve, 1894 |
| Caloneis latiuscula (Kütz.) Cleve, 1894 |
| Caloneis liber (W. Sm.) Cleve, 1894 |
| Caloneis linearis (Grunow) Boyer, 1927 |
| Caloneis mexicana Heiden, 1906 |
| Caloneis molaris (Grunow) Krammer, 1985 |
| Caloneis permagna (Bailey) Cleve, 1894 |
| Caloneis powelli (Lewis) Cleve, 1894 |
| Caloneis probabilis (A. Schmidt) Cleve, 1894 |
| Caloneis silicula (Ehrenb.) Cleve, 1894 |
| Caloneis subsalina (Donk.) Hendey, 1951 |
| Caloneis ventricosa (Ehrenb.) Meister, 1912 |