| Encyclia subulatifolia (A. Rich. & Galeotti) Dressler, 1961 |
| Encyclia tenuissima (Ames, F.T. Hubb. & C. Schweinf.) Dressler, 1961 |
| Encyclia tessellata (Bateman ex Lindl.) Schltr., 1918 |
| Encyclia trachycarpa (Lindl.) Schltr., 1918 |
| Encyclia trachychila (Lindl.) Schltr., 1918 |
| Encyclia triptera (Brongn.) Dressler & G.E. Pollard, 1971 |
| Encyclia tripunctata (Lindl.) Dressler, 1961 |
| Encyclia trulla (Rchb. f.) Christenson, 1996 |
| Encyclia tuerckheimii Schltr., 1918 |
| Encyclia uxpanapensis Salazar, 1999 |
| Encyclia vagans (Ames) Dressler & G.E. Pollard, 1971 |
| Encyclia varicosa (Bateman ex Lindl.) Schltr., 1918 |
| Encyclia varicosa subsp. leiobulbon (Hook.) Dressler & G.E. Pollard, 1971 |
| Encyclia venosa (Lindl.) Schltr., 1918 |
| Encyclia virens (Lindl. & Paxton) Schltr., 1914 |
| Encyclia virgata (Lindl.) Schltr., 1914 |
| Encyclia vitellina (Lindl.) Dressler, 1961 |
| Encyclia wendlandiana (Kraenzl.) Schltr., 1918 |
| Encyclia x nizanburyi Pérez-García & Hágsater, 2012 |
| Encyclia x nizandensis Pérez-García & Hágsater, 2003 |