| Peromyscus alstoni Merriam, 1898 |
| Peromyscus alstoni subsp. alstoni Merriam, 1898 |
| Peromyscus amplus Osgood, 1904 |
| Peromyscus analogus Osgood, 1909 |
| Peromyscus angelensis Osgood, 1904 |
| Peromyscus angelensis subsp. putlaensis Goodwin, 1964 |
| Peromyscus angustirostris Hall & Álvarez, 1961 |
| Peromyscus attwateri Bailey, 1905 |
| Peromyscus attwateri subsp. eremicoides Osgood, 1904 |
| Peromyscus auritus Merriam, 1898 |
| Peromyscus avius Osgood, 1909 |
| Peromyscus aztecus (Saussure, 1860) |
| Peromyscus aztecus subsp. aztecus (Saussure, 1860) |
| Peromyscus aztecus subsp. evides Osgood, 1904 |
| Peromyscus aztecus subsp. hylocetes Merriam, 1898 |
| Peromyscus aztecus subsp. oaxacensis Merriam, 1898 |
| Peromyscus banderanus J. A. Allen, 1897 |
| Peromyscus banderanus subsp. angelensis Osgood, 1904 |
| Peromyscus banderanus subsp. coatlanensis Goodwin, 1956 |
| Peromyscus banderanus subsp. sloeops Goodwin, 1956 |