| Peromyscus homochroia Elliot, 1903 |
| Peromyscus hondurensis Goodwin, 1941 |
| Peromyscus hooperi Lee & Schmidly, 1977 |
| Peromyscus hylocetes Merriam, 1898 |
| Peromyscus hylocetes subsp. yautepecus Goodwin, 1955 |
| Peromyscus imperfectus Dice, 1925 |
| Peromyscus insignis Rhoads, 1895 |
| Peromyscus interparietalis Burt, 1932 |
| Peromyscus interparietalis subsp. interparietalis Burt, 1932 |
| Peromyscus interparietalis subsp. lorenzi Banks, 1967 |
| Peromyscus interparietalis subsp. ryckmani Banks, 1967 |
| Peromyscus ixtlani Goodwin, 1964 |
| Peromyscus kilpatricki R. D. Bradley, Ordóñez-Garza, Ceballos, Rogers, & Schmidly, 2016 |
| Peromyscus labecula Elliot, 1903 |
| Peromyscus labecula subsp. blandus Osgood, 1904 |
| Peromyscus labecula subsp. fulvus Osgood, 1904 |
| Peromyscus labecula subsp. labecula Elliot, 1903 |
| Peromyscus laceianus Bailey, 1906 |
| Peromyscus latirostris Dalquest, 1950 |
| Peromyscus lepturus Merriam, 1898 |