| Peromyscus melanophrys subsp. micropus R. H. Baker, 1952 |
| Peromyscus melanophrys subsp. xenurus Osgood, 1904 |
| Peromyscus melanophrys subsp. zamorae Osgood, 1904 |
| Peromyscus melanotis J. A. Allen & Chapman, 1897 |
| Peromyscus melanotis subsp. melanotis J. A. Allen & Chapman, 1897 |
| Peromyscus melanotis subsp. zamelas Osgood, 1904 |
| Peromyscus melanurus Osgood, 1909 |
| Peromyscus merriami Mearns, 1896 |
| Peromyscus merriami subsp. goldmani Osgood, 1904 |
| Peromyscus merriami subsp. merriami Mearns, 1896 |
| Peromyscus metallicola Elliot, 1904 |
| Peromyscus mexicanus (Saussure, 1860) |
| Peromyscus mexicanus subsp. angelensis Osgood, 1904 |
| Peromyscus mexicanus subsp. azulensis Goodwin, 1956 |
| Peromyscus mexicanus subsp. gymnotis Thomas, 1894 |
| Peromyscus mexicanus subsp. mexicanus (Saussure, 1860) |
| Peromyscus mexicanus subsp. orizabae Merriam, 1898 |
| Peromyscus mexicanus subsp. putlaensis Goodwin, 1964 |
| Peromyscus mexicanus subsp. saxatilis Merriam, 1898 |
| Peromyscus mexicanus subsp. teapensis Osgood, 1904 |