| Neotoma bryanti subsp. bunkeri Burt, 1932 |
| Neotoma bryanti subsp. intermedia Rhoads, 1894 |
| Neotoma bryanti subsp. marcosensis Burt, 1932 |
| Neotoma bryanti subsp. martinensis Goldman, 1905 |
| Neotoma bunkeri Burt, 1932 |
| Neotoma californica Price, 1894 |
| Neotoma cumulator Mearns, 1897 |
| Neotoma desertorum Merriam, 1894 |
| Neotoma desertorum subsp. grandis Elliot, 1904 |
| Neotoma desertorum subsp. sola Merriam, 1894 |
| Neotoma devia Goldman, 1927 |
| Neotoma distincta Bangs, 1903 |
| Neotoma ferruginea Tomes, 1862 |
| Neotoma ferruginea subsp. chamula Goldman, 1909 |
| Neotoma ferruginea subsp. griseoventer Dalquest, 1951 |
| Neotoma ferruginea subsp. isthmica Goldman, 1904 |
| Neotoma ferruginea subsp. ochracea Goldman, 1905 |
| Neotoma ferruginea subsp. picta Goldman, 1904 |
| Neotoma ferruginea subsp. tenuicauda Merriam, 1892 |
| Neotoma fulviventer Merriam, 1894 |