| Neotoma micropus subsp. littoralis Goldman, 1905 |
| Neotoma micropus subsp. micropus Baird, 1855 |
| Neotoma micropus subsp. planiceps Goldman, 1905 |
| Neotoma montezumae Goldman, 1905 |
| Neotoma nava Merriam, 1903 |
| Neotoma nelsoni Goldman, 1905 |
| Neotoma nevadensis Taylor, 1910 |
| Neotoma nudicauda Goldman, 1905 |
| Neotoma palatina Goldman, 1905 |
| Neotoma parvidens Goldman, 1904 |
| Neotoma phenax (Merriam, 1903) |
| Neotoma picta Goldman, 1904 |
| Neotoma sinaloae J. A. Allen, 1898 |
| Neotoma tenuicauda Merriam, 1892 |
| Neotoma torquata Ward, 1891 |
| Neotoma tropicalis Goldman, 1904 |
| Neotoma varia Burt, 1932 |
| Neotoma venusta True, 1894 |
| Neotominae Merriam, 1894 |
| Neotomodon Merriam, 1898 |