| Neotoma leucodon subsp. leucodon Merriam, 1894 |
| Neotoma leucodon subsp. subsolana Álvarez, 1962 |
| Neotoma leucodon subsp. zacatecae Goldman, 1905 |
| Neotoma macrotis Thomas, 1893 |
| Neotoma martinensis Goldman, 1905 |
| Neotoma melanura Merriam, 1894 |
| Neotoma mexicana Baird, 1855 |
| Neotoma mexicana subsp. bullata Mearns, 1907 |
| Neotoma mexicana subsp. chamula Goldman, 1909 |
| Neotoma mexicana subsp. distincta Bangs, 1903 |
| Neotoma mexicana subsp. eremita Hall, 1955 |
| Neotoma mexicana subsp. griseoventer Dalquest, 1951 |
| Neotoma mexicana subsp. inornata Goldman, 1938 |
| Neotoma mexicana subsp. isthmica Goldman, 1910 |
| Neotoma mexicana subsp. madrensis Goldman, 1905 |
| Neotoma mexicana subsp. mexicana Baird, 1855 |
| Neotoma mexicana subsp. nava Merriam, 1903 |
| Neotoma mexicana subsp. ochracea Goldman, 1905 |
| Neotoma mexicana subsp. parvidens Goldman, 1904 |
| Neotoma mexicana subsp. picta Goldman, 1904 |