| Neotoma mexicana subsp. bullata Mearns, 1907 |
| Neotoma mexicana subsp. chamula Goldman, 1909 |
| Neotoma mexicana subsp. distincta Bangs, 1903 |
| Neotoma mexicana subsp. eremita Hall, 1955 |
| Neotoma mexicana subsp. griseoventer Dalquest, 1951 |
| Neotoma mexicana subsp. inornata Goldman, 1938 |
| Neotoma mexicana subsp. isthmica Goldman, 1910 |
| Neotoma mexicana subsp. madrensis Goldman, 1905 |
| Neotoma mexicana subsp. mexicana Baird, 1855 |
| Neotoma mexicana subsp. nava Merriam, 1903 |
| Neotoma mexicana subsp. ochracea Goldman, 1905 |
| Neotoma mexicana subsp. parvidens Goldman, 1904 |
| Neotoma mexicana subsp. picta Goldman, 1904 |
| Neotoma mexicana subsp. sinaloae J. A. Allen, 1898 |
| Neotoma mexicana subsp. tenuicauda Merriam, 1892 |
| Neotoma mexicana subsp. torquata Ward, 1891 |
| Neotoma mexicana subsp. tropicalis Goldman, 1904 |
| Neotoma micropus Baird, 1855 |
| Neotoma micropus subsp. canescens J. A. Allen, 1891 |
| Neotoma micropus subsp. leucophaea Goldman, 1933 |