| Neotoma lepida subsp. aureotunicata Huey, 1937 |
| Neotoma lepida subsp. bensoni Blossom, 1935 |
| Neotoma lepida subsp. egressa Orr, 1934 |
| Neotoma lepida subsp. felipensis Elliot, 1903 |
| Neotoma lepida subsp. gilva Rhoads, 1894 |
| Neotoma lepida subsp. insularis Townsend, 1912 |
| Neotoma lepida subsp. intermedia Rhoads, 1894 |
| Neotoma lepida subsp. latirostra Burt, 1932 |
| Neotoma lepida subsp. lepida Thomas, 1893 |
| Neotoma lepida subsp. marcosensis Burt, 1932 |
| Neotoma lepida subsp. molagrandis Huey, 1945 |
| Neotoma lepida subsp. notia E. W. Nelson & Goldman, 1931 |
| Neotoma lepida subsp. nudicauda Goldman, 1905 |
| Neotoma lepida subsp. perpallida Goldman, 1909 |
| Neotoma lepida subsp. pretiosa von Bloeker, 1938 |
| Neotoma lepida subsp. ravida E. W. Nelson & Goldman, 1931 |
| Neotoma lepida subsp. vicina Goldman, 1909 |
| Neotoma leucodon Merriam, 1894 |
| Neotoma leucodon subsp. durangae J. A. Allen, 1903 |
| Neotoma leucodon subsp. latifrons Merriam, 1894 |