| Neotoma lepida subsp. latirostra Burt, 1932 |
| Neotoma lepida subsp. lepida Thomas, 1893 |
| Neotoma lepida subsp. marcosensis Burt, 1932 |
| Neotoma lepida subsp. molagrandis Huey, 1945 |
| Neotoma lepida subsp. notia E. W. Nelson & Goldman, 1931 |
| Neotoma lepida subsp. nudicauda Goldman, 1905 |
| Neotoma lepida subsp. perpallida Goldman, 1909 |
| Neotoma lepida subsp. pretiosa von Bloeker, 1938 |
| Neotoma lepida subsp. ravida E. W. Nelson & Goldman, 1931 |
| Neotoma lepida subsp. vicina Goldman, 1909 |
| Neotoma leucodon Merriam, 1894 |
| Neotoma leucodon subsp. durangae J. A. Allen, 1903 |
| Neotoma leucodon subsp. latifrons Merriam, 1894 |
| Neotoma leucodon subsp. leucodon Merriam, 1894 |
| Neotoma leucodon subsp. subsolana Álvarez, 1962 |
| Neotoma leucodon subsp. zacatecae Goldman, 1905 |
| Neotoma macrotis Thomas, 1893 |
| Neotoma martinensis Goldman, 1905 |
| Neotoma melanura Merriam, 1894 |
| Neotoma mexicana Baird, 1855 |