| Neotoma mexicana subsp. sinaloae J. A. Allen, 1898 |
| Neotoma mexicana subsp. tenuicauda Merriam, 1892 |
| Neotoma mexicana subsp. torquata Ward, 1891 |
| Neotoma mexicana subsp. tropicalis Goldman, 1904 |
| Neotoma micropus Baird, 1855 |
| Neotoma micropus subsp. canescens J. A. Allen, 1891 |
| Neotoma micropus subsp. leucophaea Goldman, 1933 |
| Neotoma micropus subsp. littoralis Goldman, 1905 |
| Neotoma micropus subsp. micropus Baird, 1855 |
| Neotoma micropus subsp. planiceps Goldman, 1905 |
| Neotoma montezumae Goldman, 1905 |
| Neotoma nava Merriam, 1903 |
| Neotoma nelsoni Goldman, 1905 |
| Neotoma nevadensis Taylor, 1910 |
| Neotoma nudicauda Goldman, 1905 |
| Neotoma palatina Goldman, 1905 |
| Neotoma parvidens Goldman, 1904 |
| Neotoma phenax (Merriam, 1903) |
| Neotoma picta Goldman, 1904 |
| Neotoma sinaloae J. A. Allen, 1898 |