| Neotoma albigula subsp. zacatecae Goldman, 1910 |
| Neotoma alleni Merriam, 1892 |
| Neotoma alleni subsp. alleni Merriam, 1892 |
| Neotoma alleni subsp. guerrerensis (Goldman, 1938) |
| Neotoma alleni subsp. vetula Kelson, 1952 |
| Neotoma angustapalata R. H. Baker, 1951 |
| Neotoma anthonyi J. A. Allen, 1898 |
| Neotoma arenacea J. A. Allen, 1898 |
| Neotoma bella Bangs, 1899 |
| Neotoma bella subsp. felipensis Elliot, 1903 |
| Neotoma bryanti Merriam, 1887 |
| Neotoma bryanti subsp. anthonyi J. A. Allen, 1898 |
| Neotoma bryanti subsp. bryanti Merriam, 1887 |
| Neotoma bryanti subsp. bunkeri Burt, 1932 |
| Neotoma bryanti subsp. intermedia Rhoads, 1894 |
| Neotoma bryanti subsp. marcosensis Burt, 1932 |
| Neotoma bryanti subsp. martinensis Goldman, 1905 |
| Neotoma bunkeri Burt, 1932 |
| Neotoma californica Price, 1894 |
| Neotoma cumulator Mearns, 1897 |